Budd, Graham E. “The Morphology of Opabinia regalis and the Reconstruction of the Arthropod Stem-Group.” Lethaia 29 (1996): 1–14.
Budd, Graham E., and Sören Jensen. “A Critical Reappraisal of the Fossil Record of the Bilaterian Phyla.” Biological Reviews of the Cambridge Philosophical Society 75 (2000): 253–95.
——— . “The Limitations of the Fossil Record and the Dating of the Origin of the Bilateria.” In Telling the Evolutionary Time: Molecular Clocks and the Fossil Record, edited by P. C. J. Donoghue and M. P. Smith, 166–89. London: Taylor & Francis, 2003.
Burgess-Beusse, B., C. Farrell, M. Gaszner, M. Litt, V. Mutskov, F. Recillas-Targa, M. Simpson, A. West, and G. Felsenfeld. “The Insulation of Genes from External Enhancers and Silencing Chromatin.” Proceedings of the National Academy of Sciences USA 99 (2002): 16433–37.
Butcher, Samuel E. “The Spliceosome as Ribozyme Hypothesis Takes a Second Step.” Proceedings of the National Academy of Sciences USA 106 (2009): 12211–12.
Cameron, Chris B., James R. Garey, and Billie J. Swalla. “Evolution of the Chordate Body Plan: New Insights from Phylogenetic Analyses of Deuterostome Phyla.” Proceedings of the National Academy of Sciences USA 97 (2000): 4469–74.
Cameron, R. A., et al. “A Sea Urchin Genome Project: Sequence Scan, Virtual Map, and Additional Resources.” Proceedings of the National Academy of Sciences USA 97 (2000): 9514–18.
Canoe, Inc. “Yoho National Park.” http://www.canadianparks.com/bcolumbia/yohonpk/index.htm (accessed March 22, 2013).
Carrieri, C., et al. “Long NonCoding Antisense RNA Controls Uchl1 Translation Through An Embedded SINEB2 Repeat.” Nature 49 (2012): 454–57.
Carroll, Robert L. Patterns and Processes of Vertebrate Evolution. Cambridge: Cambridge Univ. Press, 1997.
——— . “Towards a New Evolutionary Synthesis.” Trends in Ecology and Evolution 15 (2000): 27–32.
Carroll, Sean B. Endless Forms Most Beautiful: The New Science of Evo Devo. New York: Norton, 2006.
Chamberlain, Thomas C. “The Method of Multiple Working Hypotheses.” Science (old series) 15 (1890): 92–96. Reprinted in Science 148 (1965): 754–59. Also reprinted in Journal of Geology (1931): 155–65.
Chargaff, Erwin. “Chemical Specificity of Nucleic Acids and Mechanism of Their Enzymic Degradation.” In Essays on Nucleic Acids, 1–24. New York: Elsevier, 1963.
Charlesworth, Brian, Russell Lande, and Montgomery Slatkin. “A Neo-Darwinian Commentary on Macroevolution.” Evolution 36, no. 3 (1982): 474–98.
Chen, J. Y. “Early Crest Animals and the Insight They Provide into the Evolutionary Origin of Craniates.” Genesis 46 (2008): 623–39.
Chen, J. Y., J. Dzik, G. D. Edgecombe, L. Ramsköld, and G.-Q. Zhou. “A Possible Early Cambrian Chordate.” Nature 377 (1995): 720–22.
Chen, J. Y., D. Y. Huang, and C. W. Li. “An Early Cambrian Craniate-like Chordate.” Nature 402 (1999): 518–22.
Chen, J. Y., and C. W. Li. “Early Cambrian Chordate from Chengjiang, China.” Bulletin of the National Museum of Natural Science of Taiwan 10 (1997): 257–73.
Chen, J. Y., C. W. Li, Paul Chien, G.-Q. Zhou, and Feng Gao. “Weng’an Biota: A Light Casting on the Precambrian World.” Paper presented to “The Origin of Animal Body Plans and Their Fossil Records” Conference, Kunming, China, June 20–26, 1999, sponsored by the Early Life Research Center and the Chinese Academy of Sciences.
Chen, J. Y., P. Oliveri, F. Gao, S. Q. Dornbos, C. W. Li, D. J. Bottjer, and E. H. Davidson. “Precambrian Animal Life: Probable Developmental and Adult Cnidarian Forms from Southwest China.” Developmental Biology 248 (2002): 182–96.
Chen, J. Y., J. W. Schopf, et al. “Raman Spectra of a Lower Cambrian Ctenophore Embryo from Southwestern Shaanxi, China.” Proceedings of the National Academy of Sciences USA 104 (2007): 6289–92.
Chen, J. Y., and G.-Q. Zhou. “Biology of the Chengjiang Fauna.” In The Cambrian Explosion and the Fossil Record, edited by Chen, J. Y., Y. Cheng, and H. V. Iten, 11–106. Taiwan: National Museum of Natural Science, 1997.
Chen, J. Y., G.-Q. Zhou, M. Y. Zhu, and K. Y. Yeh. The Chengjiang Biota: A Unique Window of the Cambrian Explosion. Taichung, Taiwan: National Museum of Natural Science, 1996.
Chen, Liangbiao, Arthur L. DeVries, and Chi-Hing C. Cheng. “Evolution of Antifreeze Glycoprotein Gene from a Trypsinogen Gene in Antarctic Notothenioid Fish.” Proceedings of the National Academy of Sciences USA 94 (1997): 3811–16.
——— . “Convergent Evolution of Antifreeze Glycoproteins in Antarctic Notothenioid Fish and Arctic Cod.” Proceedings of the National Academy of Sciences USA 94 (1997): 3817–22.
Chen, LingLing, Joshua N. DeCerbo, and Gordon G. Carmichael. “Alu Element-Mediated Gene Silencing.” EMBO Journal (2008): 1–12.
Chesterton, G. K. “The Invisible Man.” In The Complete “Father Brown,” at ebooks.adelaide.edu.auu/c/Chesterton/gk/c52fb/chapter5.html. First published in The Saturday Evening Post, January 28, 1911, 5–7, 30.
Chien, Paul, J. Y. Chen, C. W. Li, and Frederick Leung. “SEM Observation of Precambrian Sponge Embryos from Southern China, Revealing Ultrastructures Including Yolk Granules, Secretion Granules, Cytoskeleton, and Nuclei.” Paper presented to the North American Paleontological Convention, University of California, Berkeley, June 26–July 1, 2001.
Christin, P. A., D. M. Weinreich, and G. Bresnard. “Causes and Evolutionary Significance of Genetic Convergence.” Trends in Genetics 26 (2010): 400–405.
Cisne, J. L. “Trilobites and the Origin of Arthropods.” Science 186 (1974): 13–18.
Cloud, Wallace. “The Ship That Digs Holes in the Sea.” Popular Mechanics 131 (1969): 108–11, 236.
Cohen, Bernard I., ed. Isaac Newton’s Papers and Letters on Natural Philosophy. Cambridge: Cambridge Univ. Press, 1958.
Colas, A. R., et al. “Whole-Genome MicroRNA Screening Identifies let-7 and miR-18 as Regulators of Germ Layer Formation During Early Embryogenesis.” Genes and Development 26 (2012): 2567–79.
Collins, Desmond. “Misadventures in the Burgess Shale.” Nature 460 (2009): 952–53.
Collins, Francis. The Language of God. New York: Free Press, 2006.
Conant, James B. Modern Science and Modern Man. New York: Doubleday Anchor, 1953.
Conniff, Richard. “When Continental Drift Was Considered Pseudoscience.” Smithsonian Magazine, June 2012. http://www.smithsonianmag.com/science-nature/When-Continental-Drift-Was-Considered-Pseudoscience.html (accessed December 30, 2012).
Conway Morris, Simon. “Burgess Shale Faunas and the Cambrian Explosion.” Science 246 (1989): 339–46.
——— . “Ediacaran-like Fossils in Cambrian Burgess Shale-type Faunas of North America.” Paleontology 36 (1993): 593–635.
——— . “Early Metazoan Evolution: Reconciling Paleontology and Molecular Biology.” American Zoologist 38 (1998): 867–77.
——— . “Nipping the Cambrian “Explosion” in the Bud?” BioEssays 22 (2000): 1053–56.
——— . The Crucible of Creation: The Burgess Shale and the Rise of Animals. Oxford: Oxford Univ. Press, 2000.
——— . “Evolution: Bringing Molecules into the Fold.” Cell 100 (2000): 1–11.
——— . “The Cambrian ‘Explosion’ of Metazoans and Molecular Biology: Would Darwin Be Satisfied?” International Journal of Developmental Biology 47 (2003): 505–15.
——— . “The Cambrian ‘Explosion’ of Metazoans.” In Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary Biology, edited by G. B. Müller and S. A. Newman, 13–32. Cambridge, MA: MIT Press, 2003.
——— . Life’s Solution: Inevitable Humans in a Lonely Universe. Cambridge: Cambridge Univ. Press, 2003.
——— . “Darwin’s Dilemma: The Realities of the Cambrian ‘Explosion.’ ” Philosophical Transactions of the Royal Society B 361 (2006): 1069–83.
——— . “Walcott, the Burgess Shale and Rumours of a Post-Darwinian World.” Current Biology 19 (2009): R927–31.
Conway Morris, S., and D. H. Collins. “Middle Cambrian Ctenophores from the Stephen Formation, British Columbia, Canada.” Philosophical Transactions of the Royal Society B: Biological Sciences 351 (1996): 279–308.
Conway Morris, S., and J. S. Peel. “Articulated Halkieriids from the Lower Cambrian of North Greenland and Their Role in Early Protostome Evolution.” Philosophical Transactions of the Royal Society B: Biological Sciences 347 (1995): 305–58.
——— . “The Earliest Annelids: Lower Cambrian Polychaetes from the Sirius Passet Lagerstätte, Peary Land, North Greenland.” Acta Palaeontologica Polonica 53 (2008): 137–48.
Cooper, Alan, and Richard Fortey. “Evolutionary Explosions and the Phylogenetic Fuse.” Trends in Ecology and Evolution 13 (1998):151–56.
Courseaux, Anouk, and Jean-Louis Nahon. “Birth of Two Chimeric Genes in the Hominidae Lineage.” Science 291 (2001): 1293–97.
Coyne, Jerry. “The Great Mutator: Review of The Edge of Evolution, by Michael J. Behe.” New Republic, June 18, 2007, 38–44.
——— . Why Evolution Is True. New York: Viking, 2009.
Crick, Francis. “On Protein Synthesis.” Symposium for the Society of Experimental Biology 12 (1958): 138–63.
——— . What Mad Pursuit: A Personal View of Scientific Discovery. New York: Basic Books, 1988.
Crick, Francis, and James Watson. “A Structure for Deoxyribose Nucleic Acid.” Nature 171 (1953): 737–38.
Crocker, Caroline. Free to Think: Why Scientific Integrity Matters. Port Orchard, WA: Leafcutter Press, 2010.
Crowther, Robert. “Academic Freedom Expelled from Baylor University.” Evolution News and Views, September 5, 2007. http://www.evolutionnews.org/2007/09/academic_freedom_expelled_from004189.html.
Cunningham, J. A., et al. “Experimental Taphonomy of Giant Sulphur Bacteria: Implications for the Interpretation of the Embryo-Like Ediacaran Doushantuo Fossils.” Proceedings of the Royal Society B 279 (2012): 1857–64.
Daley, A. C. “The Morphology and Evolutionary Significance of the Anomalocaridids.” Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 714 (2010): 9–34.
Darnell, J. E., and W. F. Doolittle. “Speculations on the Early Course of Evolution.” Proceedings of the National Academy of Sciences USA 83 (1986): 1271–75.
Darwin, Charles. On the Origin of Species by Means of Natural Selection. A facsimile of the first edition, published by John Murray, London, 1859. Reprint, Cambridge, MA: Harvard Univ. Press, 1964.
——— . On the Origin of Species by Means of Natural Selection. 6th ed. London: John Murray, 1872.
——— . The Autobiography of Charles Darwin, 1809–1882. Edited by Nora Barlow. New York: Norton, 1958.
——— . The Illustrated Origin of Species. Abridged and introduced by Richard Leakey. 6th ed. London: Faber and Faber, 1979.
Dávalos, Liliana M., Andrea L. Cirranello, Jonathan H. Geisler, and Nancy B. Simmons. “Understanding Phylogenetic Incongruence: Lessons from Phyllostomid Bats.” Biological Reviews 87 (2012): 991–1024.
Davidson, Eric H. Genomic Regulatory Systems: Development and Evolution. New York: Academic, 2001.
——— . The Regulatory Genome: Gene Regulatory Networks in Development and Evolution. Burlington: Elsevier, 2006.
——— . “Evolutionary Bioscience as Regulatory Systems Biology.” Developmental Biology 357 (2011): 35–40.
Davidson, Eric H., and Douglas Erwin. “An Integrated View of Precambrian Eumetazoan Evolution.” Cold Spring Harbor Symposia on Quantitative Biology 74 (2010): 1–16.
Davidson, Eric H., Kevin J. Peterson, and R. Andrew Cameron. “Origin of Bilaterian Body Plans: Evolution of Developmental Regulatory Mechanisms.” Science 270 (1995): 1319–24.
Dawkins, Richard. The Blind Watchmaker: Why the Evidence Reveals a Universe Without Design. New York: Norton, 1986.
——— . River Out of Eden: A Darwinian View of Life. New York: Basic Books, 1995.
——— . Climbing Mount Improbable. New York: Norton, 1996.
——— . Unweaving the Rainbow: Science, Delusion, and the Appetite for Wonder. Boston: Houghton Mifflin, 1998.
——— . A Devil’s Chaplain: Reflections on Hope, Lies, Science, and Love. Boston: Houghton Mifflin, 2003.
——— . The God Delusion. Boston: Houghton Mifflin, 2006.
——— . The Greatest Show on Earth: The Evidence for Evolution. New York: Free Press, 2009.
Dean, Cornelia. “Scientists Feel Miscast in Film on Life’s Origin.” New York Times, September 27, 2007.
De Duve, C. Blueprint for a Cell: The Nature and Origin of Life. Burlington, NC: Patterson, 1991.
Degnan, James H., and Noah A. Rosenberg. “Gene Tree Discordance, Phylogenetic Inference and the Multispecies Coalescent.” Trends in Ecology and Evolution 24 (2009): 332–40.
Delsuc, Frederic, Matthew J. Phillips, and David Penny. “Comment on ‘Hexapod Origins: Monophyletic or Paraphyletic?’ ” Science 301 (2003): 1482.
Dembski, William A. “Intelligent Science and Design.” First Things 86 (1998): 21–27.
——— . The Design Inference: Eliminating Chance Through Small Probabilities. Cambridge: Cambridge Univ. Press, 1998.
——— . “Intelligent Design as a Theory of Technological Evolution.” Progress in Complexity, Information, and Design 1.2 (2002). Available at http://www.iscid.org.
——— . No Free Lunch: Why Specified Complexity Cannot Be Purchased Without Intelligence. Boston: Rowman & Littlefield, 2002.
Demuth, J. P., T. De Bie, J. E. Stajich, N. Cristianini, and M. W. Hahn. “The Evolution of Mammalian Gene Families.” PLoS One 1 (2006): e85.
Dennett, Daniel C. Darwin’s Dangerous Idea: Evolution and the Meanings of Life. New York: Simon & Schuster, 1995.
Denton, Michael. Evolution: A Theory in Crisis. London: Adler and Adler, 1985.
De Rosa, R., J. K. Grenier, T. Andreeva, C. E. Cook, A. Adoutte, M. Akam, S. B. Carroll, and G. Balavoine. “Hox Genes in Brachiopods and Priapulids and Protostome Evolution.” Nature 399 (1999): 772–76.
Dillon, William. “Regents Deny Gonzalez’s Tenure Appeal.” Ames Tribune, February 7, 2008.
Dobzhansky, Theodosius. “Discussion of G. Schramm’s Paper.” In The Origins of Prebiological Systems and of Their Molecular Matrices, edited by S. W. Fox, 309–15. New York: Academic, 1965.
——— . “Nothing in Biology Makes Sense Except in the Light of Evolution.” American Biology Teacher 35 (1973): 125–29.
Donnelly, S. R., T. E. Hawkins, and S. E. Moss, “A Conserved Nuclear Element with a Role in Mammalian Gene Regulation.” Human Molecular Genetics 8 (1999): 1723–28.
Doolittle, Russell F., D. F. Feng, S. Tsang, G. Cho, and E. Little. “Determining Divergence Times of the Major Kingdoms of Living Organisms with a Protein Clock.” Science 271 (1996): 470–77.
Doolittle, W. F. “Phylogenetic Classification and the Universal Tree.” Science 284 (1999): 2124–28.
Dott, Robert H., Jr., and Donald R. Prothero. Evolution of the Earth. 5th ed. New York: McGraw-Hill, 1994.
Douglas, Michael Edward, and John C. Avise. “Speciation Rates and Morphological Divergence in Fishes: Tests of Gradual Versus Rectangular Modes of Evolutionary Change.” Evolution 36 (1982): 224–32.
Dunbar, Carl O. Historical Geology. New York: Wiley, 1949.
Dunlap, K.A., M. Palmarini, M. Varela, R. C. Burghardt, K. Hayashi, J. L. Farmer, and T. E. Spencer. “Endogenous Retroviruses Regulate Periimplantation Placental Growth and Differentiation.” Proceedings of the National Academy of Sciences USA 103 (2006): 14390–95.
Dunn, C. A., P. Medstrand, and D. L. Mager. “An Endogenous Retroviral Long Terminal Repeat Is the Dominant Promoter for Human B1, 3-galactosyltransferase 5 in
the Colon.” Proceedings of the National Academy of Sciences USA 100 (2003): 12841–46.
Dupree, A. Hunter. Asa Gray: American Botanist, Friend of Darwin. Cambridge, MA: Harvard Univ. Press, Belknap Press, 1959.
Durrett, Rick, and Deena Schmidt. “Waiting for Two Mutations: With Applications to Regulatory Sequence Evolution and the Limits of Darwinian Evolution.” Genetics 180 (2008): 1501–9.
Dzik, J. “Yunnanozoon and the Ancestry of Chordates.” Acta Palaeontologica Polanica 40 (1995): 341–60.
Ebert, James, et al. Science and Creationism: A View from the National Academy of Science. Washington, DC: National Academy Press, 1984.
Ecker, J. R., W. A. Bickmore, I. Barroso, J. K. Pritchard, Y. Gilad, and E. Segal. “Genomics: ENCODE Explained.” Nature 489 (2012): 52–55.
Eden, Murray. “Inadequacies of Neo-Darwinian Evolution as a Scientific Theory.” In Mathematical Challenges to the Neo-Darwinian Interpretation of Evolution, edited by P. S. Moorhead and M. M. Kaplan, 109–11. Wistar Institute Symposium Monograph No. 5. New York: Liss, 1967.
Edgecombe, G. D., G. Giribet, C. W. Dunn, A. Hejnol, R. M. Kristensen, R. C. Neves, G. W. Rouse, K. Worsaae, and M. V. Sørensen. “Higher-Level Metazoan Relationships: Recent Progress and Remaining Questions.” Organisms, Diversification, and Evolution 11 (2011): 151–72.
Edidin, Michael. “Patches, Posts and Fences: Proteins and Plasma Membrane Domains.” Trends in Cell Biology 2 (1992): 376–80.
Eger, Martin. “A Tale of Two Controversies: Dissonance in the Theory and Practice of Rationality.” Zygon 23 (1988): 291–326.
Ehrlich, Paul, and Richard Holm. The Processes of Evolution. New York: McGraw-Hill, 1963.
Eldredge, Niles. Reinventing Darwin: The Great Debate at the High Table of Evolutionary Theory. New York: Wiley, 1995.
——— . The Pattern of Evolution. New York: Freeman, 1999.
——— . The Triumph of Evolution and the Failure of Creationism. New York: Freeman, 2000.
Eldredge, Niles, and Stephen Jay Gould. “Punctuated Equilibria: An Alternative to Phyletic Gradualism.” In Models in Paleobiology, edited by T. J. M. Schopf. San Francisco: Freeman, Cooper, 1972.
Enard, Wolfgang et al. “Molecular Evolution of FOXP2, a Gene Involved in Speech and Language.” Nature 418 (2002): 869–72.
Darwin's Doubt Page 57
