Life Finds a Way

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Life Finds a Way Page 25

by Andreas Wagner


  local minima

  description/examples, 122–123

  See also combinatorial optimization problems

  location

  determination (landscapes), 105–107

  vehicle routing problems, 119

  Loewi, Otto, 161

  London Symphony Orchestra, 138

  Lorca, Federico Garcia, 176

  LSD, 165, 166

  Lynch, Michael, 78

  Maar, Dora, 142

  McCartney, Paul, 161

  Macintosh computer, 165, 172

  McKim, Robert, 164

  Mandarte Island, 60

  mandibular prognathism/consequences, 54, 55

  Manx cats, 59–60

  Mark Twain, 173

  meditation, 163

  Melomics, 138

  Mendel, Gregor

  pea plants genetics and, 28, 150

  recognition and, 150

  Mendeleev, Dmitri, 161

  metaphor and creativity, 175–176, 190

  microarray technology

  description/functions, 50–51

  experiment examples, 51

  fitness landscapes and, 50–51

  mimicry, 26–27

  mind-wandering

  creativity and, 161–163, 164

  description/examples, 161–163

  mindfulness vs., 163

  mindfulness vs. mind-wandering, 163

  mobile DNA

  damage and, 76–77

  description, 75–76, 77

  genetic drift and, 77

  natural selection and, 76–77

  regulatory sequences and, 76

  molecular fingerprint and plants, 58

  Morgan, Thomas Hunt

  chromosomes/genetic mapping and, 33

  “fly boys” and, 33

  fruit fly experiments and, 31, 32, 33

  genetic complexity and, 32

  moths, peppered

  adaptive landscapes and, 17–19, 18 (fig.), 19 (fig.), 28–29, 29 (fig.)

  air pollution effects, 14–15, 17–19, 18 (fig.), 19 (fig.)

  allele and, 14–15, 28

  antennae/types and, 29–30

  description, 13

  genotypes and, 28

  phenotypes and, 28

  “survival of the fittest” and, 13–15, 17–19, 18 (fig.), 19 (fig.)

  typica/carbonaria types explained, 28

  wing color types/wing size/antenna size and, 28–30, 29 (fig.)

  Mozart, 2–3, 135, 137, 140, 149

  mule as hybrid, 91

  Müller, Fritz, 26

  Müllerian mimicry, 26–27

  Mullis, Kary, 165

  music composition

  computers and, 136–138

  limited amount/value and, 136

  “recombinant music,” 137

  musical dice game, 135–136

  mutations

  adaption/adaptive landscapes and, 18–19

  alleles and, 18

  as blind, 18

  complexity and, 35–36

  DNA typos and, 35–36

  moths example and, 17, 18

  point mutations, 35, 120

  processes producing, 35

  understanding and, 144

  See also specific examples

  Narrative Science, 138–139

  National Academy of Sciences, US, 172–173

  National Institutes of Health, 210

  National Inventors Hall of Fame, 147

  National Science Foundation, 201

  natural selection

  adaption/adaptive landscapes and, 18–19, 18 (fig.), 19 (fig.)

  Darwin and, 4, 12

  descriptions, 16, 37–38, 127–128

  genetic drift “relationship” and, 79

  getting stuck/dead-ends and, 6, 16, 38, 42, 43, 47, 52, 69, 91, 110, 122, 159–160

  local peak and, 38

  as not enough (evolution) and, 4, 6, 16, 37, 60

  overcoming uphill pull and population size/time, 67–68

  as uphill, 5 (fig.), 6, 37–38, 40, 42, 43, 52, 60, 66, 79, 81, 83, 109, 114, 121, 152, 164

  Nature, 195

  nautilus, 21–22

  See also ammonites

  Newcomen, Thomas, 147–148

  Newton, Isaac, 132–133, 149, 162

  Nobel Prize/laureates, 33, 103, 148, 150, 160, 161, 165, 169, 170, 172, 173, 193, 197, 201, 204, 205

  non-coding DNA

  costs/calculations, 74–75

  costs/natural selection and, 74–75

  description, 73–74

  DNA duplication/mutation and, 74

  E. coli vs. humans, 73

  gene duplication and, 74

  gene regulation and, 79

  genetic drift and, 75

  humans and, 73–74

  process/increasing, 74

  See also pseudogenes

  nuclear medicine, 170

  nucleotide building blocks, 34

  Obama, Barack, 187, 208

  Ojos Azules cats, 57

  Old Man’s Winter Night, An (Frost), 176

  orchids and lures, 49, 51

  organism size

  DNA letter numbers and, 72–73

  genetic drift and, 71, 72–73, 77

  genomes and, 71–74, 77–79

  population size and, 72

  Origin of Species (Darwin), 16, 142

  oxygen-binding proteins/evolution, 84–85

  Pachet, François, 138

  Padel, Ruth, 176

  Paris World Fair (1937), 141

  Pasteur, Louis

  “chance” quote, 145–146

  silkworms/silk industry and, 171

  vaccinations and, 148

  Pauling, Linus, 147, 193

  Payne, Joshua, 51

  penicillin, 41, 83, 87, 160, 208

  pentachlorophenol, 93

  Perugino, Pietro, 168

  pesticides, 93

  phenotypes

  definition, 28

  peppered moths and, 28

  Philip I, King, 54

  physics, theory of statistical physics, 111

  Piaget, Jean, 160–161

  Picasso, Pablo

  creativity/process and, 2–3, 141–142, 143, 145, 146, 155

  Guernica and, 141–142, 143, 145, 146, 154–155

  Pilloton, Emily, 190

  Pinker, Steven, 175

  PISA (Programme for International Student Assessment), 186

  Planck, Max, 174, 219

  play

  comparisons to genetic drift/heat, 160, 166

  costs/benefits, 158–159

  creativity and, 157–160, 164, 166

  description/examples, 157–160

  playful environment and, 164–165

  Plunckett, Roy, 147

  pneumonia bacterium, 33

  Poincaré, Henri, 155–156, 162

  point mutations, 35, 120

  polygenic variation

  definition, 15

  examples and, 15

  Prigogine, Ilya, 169, 170, 173

  Private Eye Project, 190

  Programme for International Student Assessment (PISA), 186

  Project H/Studio H, 190–191

  prolactin, 34

  protein enzymes, 24, 40

  protein hormones, 34–35

  protein texts library, 40–41

  proteins

  alternative splicing and, 45

  antifreeze proteins, 3

  folding, 34

  functions/examples, 34–35, 39–40

  heat/vibrations and, 34, 110

  as research unit, 40

  sound detection and, 45

  synthesis, 34, 39–40

  pseudogenes

  formation and, 74

  human numbers of, 75, 77

  Rabinow, Jacob, 147

  radioimmunoassay, 170

  Ramón y Cajal, Santiago, 197

  Raphael, 168, 211

  rats and play benefits, 159

  Raup, David

  ammonite swimming e
fficiency and, 23–24, 23 (fig.)

  ammonites/traits and, 22, 23–24

  Chamberlain and, 22

  recombination

  adaptive landscapes/evolution and, 7, 90–99, 140

  as almost universal, 97

  “asexual” species and, 95–97

  creativity and, 173–176, 183, 220

  description/importance, 7, 88–89

  DNA shuffling and, 94–95

  genetic algorithms and, 128

  genetic teleportation and, 88–99

  “landing” and, 97–99

  non-destructive changes and, 97–99

  “recombinant music,” 137

  sex/sex importance and, 88–91, 96

  species without human type of, 95–97

  regulators

  adaptive landscapes and, 85–86

  birth defects and, 49

  DNA words and, 48–50, 73

  transcribing genes into RNA and, 48–49

  when/where effects, 48–49, 50–51

  reporting, automated reporting, 138–139

  Rhetoric (Aristotle), 175

  ribosomes, 44–45

  ribozyme, 45–46

  Rilke, Rainer Maria, 155

  Rips, Lance, 176

  Rivera, Diego, 146

  RNA (ribonucleic acid)

  alternate splicing and, 45–46

  descriptions/functions, 34, 44–46

  DNA comparison, 44

  energy harvesting and, 3, 47–48

  protein synthesis and, 34, 44

  ribozymes and, 45–46

  telomerase/telomeres and, 44

  Robinson, James, 215

  rock garden, Ryoanji Zen temple of Kyoto, 134–135

  Rodríguez, José Aguilar, 51

  Roosevelt, Franklin Delano, 200

  Root-Bernstein, Robert, 172

  Rothamstead agricultural research station, 15

  Rothenberg, Albert, 181

  rotifers, bdelloid, 96–97

  Round Island, 70–71

  Rubin, Vera, 193

  Ruef, Kerry, 190

  Rutherford, Ernest, 149

  Ryoanji Zen temple of Kyoto, 134–135

  Santa Claus and routing, 129

  Santa Fe Institute, New Mexico, 199–200

  Schwarzrock, Ted, 179–180

  Science, The Endless Frontier (Bush), 200–201

  sea lions, 158

  seals, fur, 158

  Selfish Gene (Dawkins), 76

  Sewall Wright effect, 61

  See also genetic drift

  Shelley, Mary, 161

  Simonton, Dean

  age/creativity, 151

  failure/creativity, 150

  historical creative output analysis, 211–212

  human creativity/evolution connection, 142

  Picasso’s Guernica/sketches and, 154–155

  Simpson, George Gaylord, 20

  simulated annealing

  algorithms/greedy algorithms, 123–124, 125–126, 128–129, 134

  annealing/heat and, 123

  “cooling” and, 124, 129

  siphuncle, 21

  Skinner, B.F., 149

  snakes

  anatomy and, 49

  split-jaw snake feeding and, 70–71

  warning colors and, 25

  snowflakes

  descriptions, 112–113, 134, 140

  diversity, 112–113

  growth of, 113

  See also crystals

  Soay sheep, 60

  Socrates, 206

  solar cells/efficiency, 132

  solutions

  art and, 2

  creativity and, 3

  See also creativity

  sound pitch

  brains encoding, 152–153

  description, 152

  Souriau, Paul, 156

  Spanish Habsburg line, 54–55

  spiders and play, 159

  spliceosome, 45

  standardized tests

  alternatives, 191–192

  problems with, 162, 163, 187, 188, 189, 192

  Star Trek analogy, 88, 97

  Steiner-Johns, Vera, 146

  Stemmer, Pim, 94, 95

  Studio H/Project H, 190–191

  surgical staples, 174–175

  Szent-Györgyi, Albert, 182

  Taizong, Emperor, 188

  Tawfik, Dan, 87

  Teflon, 147

  teleportation, genetic teleportation, 88–99

  telescope positioning, 115

  telomeres/telomerase, 44

  Tempo and Mode in Evolution (Simpson), 20

  thoughts, causes of, 143–144

  thymine base, 34

  Torrance, E. Paul, 179

  Torrance Test of Creative Thinking, 179, 188

  Tourangeau, Roger, 176

  tourist destinations routing, 129

  Transfiguration of Christ, The (Raphael), 168

  traveling salesman problem (TSP), 116–117

  trucking vehicle routing problem, 115–116, 118–119, 118 (fig.)

  Turing, Alan

  computing vision, 126

  test for distinguishing AI/human intelligence, 136–137, 138

  Turing test, 136–137, 138

  Tutankhamun, King

  deformities/inbreeding and, 53–54, 60

  tomb and fetuses/canes, 53

  underworld mythological journeys, 155

  UNESCO World Heritage Site, 134

  Valéry, Paul, 146

  van der Waals force, 105

  van Tonder, Gert, 134–135

  van Veenendaal, Albert, 138

  vehicle routing problems (VRP)

  adaptive landscapes vs., 119–121

  algorithms and, 116, 119–121

  computer chips/wiring and, 117

  crystal/atom diffraction measurements and, 117

  elevation, 119

  location, 119

  natural selection vs., 121

  other examples, 116–117

  swapping and, 120–121

  telescope positions and, 115

  traveling salesman problem (TSP), 116–117

  trucking/VRP and, 115–116, 118–119, 118 (fig.)

  See also combinatorial optimization problems; cost landscape/profile

  velcro, 175

  volume measuring, 162

  von Helmholtz, Hermann

  background, 170–171

  climbing/evolution and, 52

  problem solving comparisons, 8, 99, 156

  VRP. See vehicle routing problems (VRP)

  Wagner, Andreas

  background/education background, 195–196

  roles, 3–4

  university applications/applicants, 194–195, 196, 197–198

  work/studies of, 3–4, 83–84, 86–87, 97

  warning coloration/aposematic colors

  adaptive landscapes and, 25–26

  advantages, 25

  convergent evolution and, 26–27

  description, 24–25

  Müllerian mimicry/mimicry and, 26–27

  origins and, 27

  See also specific examples

  Watson, James, 33–34, 160

  Weinreich, Daniel, 42–43

  Westermarck effect, 58

  When Will You Marry (Gauguin), 168

  White, Michelle J., 214

  Why Nations Fail (Acemoglu and Robinson), 215

  Wilson, E.O., 193

  Wilson, Robert R., 172

  Woods, Tiger, 7

  World Health Organization List of Essential Medicines, 41

  World Heritage Site, UNESCO, 134

  Wright, Sewall

  background/expertise, 5, 8, 15–16, 17

  breeding work and, 5, 15–16, 17

  gene interaction complexity and, 16, 28

  genetic drift and, 61

  Haldane/Fisher work and, 12, 15, 16

  landscape concept and, 5–6, 17, 20–21, 24, 28, 31, 32, 36, 37, 38, 40, 51–52

  pedigree studies, 16

  Yalow,
Rosalyn, 179

  “Yesterday” (McCartney), 161

  Zhao Gu, 188

  zorse as hybrid, 91

  Zuckerberg, Mark, 210

  Notes

  Prologue

  1. Appropriateness is no less important than originality: “Forty-one” is a highly original response to the question about the sum of two plus two, but it is not appropriate. Psychologists also make further distinctions, such as that between the creativity of a product (the Mona Lisa, Beethoven’s symphonies, or General MacArthur’s battle plan) and creativity as a personality trait, really a disposition, found in highly creative people like Mozart or Einstein to bring forth creative products. See page 152 of Eysenck (1993). For the purpose of this book, a product-centered definition of creativity is most appropriate.

  2. See page 33 of Kubler (1962).

  3. Although, as I mention in Chapter 1, Wright’s own experiments used guinea pigs.

  4. It is worth keeping in mind that in the realm of biology natural selection is not synonymous with competition. For example, under fertility selection, where organisms in a population differ in the number of offspring they have, perhaps through their genetic makeup and not through any limitation in resources, more fertile lineages may come to dominate a population without any need for competition. If I juxtapose competition and selection throughout, it’s because competition is perhaps the closest analogue to selection in the human realm.

  5. See page 282 of von Helmholtz (1908). This edited volume is from 1908, but the passage in question stems from a lecture that von Helmholtz gave in 1891.

  Chapter 1: The Cartography of Evolution

  1. See page 38 of Clark (2013).

  2. See Chapters 1–3 of Clark (2013).

  3. See page 100 of Clark (2013).

  4. See page 70 of Clark (2013).

  5. See Darwin (1859).

  6. See Vol. 1, Chapter IX of Darwin (1868).

  7. For a concise summary of pertinent evidence and a spirited defense of Darwin’s theory see Coyne (2005).

  8. The term survival of the fittest was coined in 1864 by Herbert Spencer and adopted by Darwin a few years later in his fifth edition of Origin.

  9. See Kettlewell (1973) and Majerus (1998). Note that these experiments were performed long after Darwin’s time. See also the blog entry “The Peppered Moth Story Is Solid” by evolutionary biologist Jerry Coyne on his blog “Why Evolution Is True” at http://whyevolutionistrue.wordpress.com/2012/02/10/the-peppered-moth-story-is-solid/.

  10. Haldane (1924).

  11. Haldane called the difference in fitness between two organisms a selection coefficient, a term still used in textbooks almost one hundred years later.

  12. See Chapters 5 and 9 of Provine (1986) as well as Wright (1978). By complex interactions I specifically mean that genes interact non-additively, non-linearly, or (in genetic jargon) epistatically when bringing forth a phenotype.

  13. Wright (1932). An earlier predecessor was proposed by the French scientist Armand Janet in 1895, but it lacked the genetic component essential to understanding evolution. See Dietrich and Skipper (2012).

  14. See Dietrich and Skipper (2012) and Skipper and Dietrich (2012). Pigliucci (2012) discusses useful distinctions between different kinds of landscapes.

 

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